r - Runtime.getRuntime().exec gets no results when used from java netbeans -

i working on java project, , stuck @ step showing no results.

the java code is:

public class callpgs {  public static void main(string[] args) {     // todo auto-generated method stub      try{             process p = runtime.getruntime().exec("c:/r/r-3.2.0/bin/rscript.exe c:/r/r-3.2.0/bin/arrayqualitymetrics.r");          int processcomplete = p.waitfor();                     if (processcomplete == 0) {                          joptionpane.showmessagedialog(null,"process completed");                         system.out.println("successfull");                    } else {                        joptionpane.showmessagedialog(null,"you have selected wrong input file");                         system.out.println("could not complete");                    }                 }                 catch (exception e1)                 {                                e1.printstacktrace();                 }     } 

}

as executing using command prompt using rscript.exe

c:\r\...\bin\rscript "arrayqualitymetrics.r"

i getting results correctly when doing java netbeans using above code, showing else option "could not complete" in netbean's console.

as other rscripts running , without error 1 not giving results, rscript arrayqualitymetrics as:-

library(arrayqualitymetrics)

library(limma)

library(tcltk)

options( warn = -1 ) #commands removing warnings comming when running rscript r console.

x <-tk_choose.files(caption = "choose files")

madata<-read.maimages(x, source="agilent", other.columns = "gprocessedsignal", green.only=true)

eset<-new("expressionset", exprs = madata$other$gprocessedsignal, annotation =madata$genes[,7])

arrayqualitymetrics(eset, outdir="qc_c", force = true, do.logtransform = true)

so want ask weather there error in rscript or there thing should add in java code run properly.... appreciable......

you can :

try{             process p = runtime.getruntime().exec("c:\\r\\r-3.2.0\\bin\\rscript.exe c:\\dir\my_script.r");          int processcomplete = p.waitfor();             if (processcomplete == 0) {                 system.out.println("successfull");            } else {                 system.out.println("could not complete");            }         }         catch (exception e)         {             e.printstacktrace();         }     } 

try add full path file need executed. have tried simple example , works fine me.

process process = runtime.getruntime().exec("notepad c:\\abc.txt");